This is a strange one. I've no idea of how it even happened but after creating a new hotspot in a scene, it somehow replaced every other hotspot throughout the game with the same script. It also copied over any Hotspot:Remember scripts.
I don't know what screenshots you may wish to see but if you do, please let me know and I'll post them.
Luckily for me I'd just made a backup before adding this evil hotspot.
Is there any scenerio that you can think of that caused this?
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You can revert the prefab back to its original state by re-importing AC's Prefabs folder from the Asset Store.